subset_variant_by_type: Subsets a variant table based on Variant Type
In campbio/BAGEL: Novel Mutational Signature Analysis
Description
Usage
Arguments
Value
Examples
View source: R/annotate_variants.R
Description
Subsets a variant table based on Variant Type
Usage
1
subset_variant_by_type(tab, type)
Arguments
tab
Input variant table
type
Variant type to return e.g. "SBS", "INS", "DEL", "DBS"
Value
Returns the input variant table subsetted to only contain variants
of the specified variant type
Examples
1
2
3
bay <- readRDS(system.file("testdata", "bagel.rds", package = "BAGEL"))
annotate_variant_type(bay)
subset_variant_by_type(get_variants(bay), "SBS")
campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.
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Description Usage Arguments Value Examples
View source: R/annotate_variants.R
Description
Subsets a variant table based on Variant Type
Usage
1 | subset_variant_by_type(tab, type)
|
Arguments
tab |
Input variant table |
type |
Variant type to return e.g. "SBS", "INS", "DEL", "DBS" |
Value
Returns the input variant table subsetted to only contain variants of the specified variant type
Examples
1 2 3 | bay <- readRDS(system.file("testdata", "bagel.rds", package = "BAGEL"))
annotate_variant_type(bay)
subset_variant_by_type(get_variants(bay), "SBS")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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