tests/testthat/test-load-vcf.R
In campbio/BAGEL: Novel Mutational Signature Analysis
context("Test Loading VCF File")
library("BAGEL")
test_that(desc = "Testing VCF Input", {
vcf_file <- system.file("testdata", "public_LUAD_TCGA-97-7938.vcf",
package = "BAGEL")
vcf <- BAGEL::extract_variants_from_vcf_file(vcf_file)
expect_s3_class(vcf, "data.table")
expect_equal(nrow(vcf), 121)
})
campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.
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context("Test Loading VCF File")
library("BAGEL")
test_that(desc = "Testing VCF Input", {
vcf_file <- system.file("testdata", "public_LUAD_TCGA-97-7938.vcf",
package = "BAGEL")
vcf <- BAGEL::extract_variants_from_vcf_file(vcf_file)
expect_s3_class(vcf, "data.table")
expect_equal(nrow(vcf), 121)
})
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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