ExperimentSubset: ExperimentSubset constructor

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

This constructor function is used to setup the ExperimentSubset object, either through manually specifying the assays, rowData, colData or directly by passing either a SingleCellExperiment or SummarizedExperiment objects or objects inherited by these classes. A subset can also be directly created by passing a named list to the subset parameter. This named list should have parameter values named as subsetName, rows, cols and parentAssay.

Usage

ExperimentSubset(
  x,
  subset = list(subsetName = NA, rows = NA, cols = NA, parentAssay = NA)
)

Arguments

x	An experiment object if direct conversion is required or a list of slots to pass onto SingleCellExperiment constructor to generate experiment object from general data.
subset	A named list if a subset should be created from within the constructor. Named parameters in this list should be subsetName, rows, cols and parentAssay.

Value

A ExperimentSubset object.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.