subsetDim: Get dimensions of subsets in ExperimentSubset objects

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Retrieves the dimensions of the specified subset in an ExperimentSubset object.

Usage

subsetDim(x, subsetName)

## S4 method for signature 'SubsetRangedSummarizedExperiment,character'
subsetDim(x, subsetName)

## S4 method for signature 'SubsetSingleCellExperiment,character'
subsetDim(x, subsetName)

## S4 method for signature 'SubsetSummarizedExperiment,character'
subsetDim(x, subsetName)

## S4 method for signature 'SubsetSpatialExperiment,character'
subsetDim(x, subsetName)

## S4 method for signature 'SubsetTreeSummarizedExperiment,character'
subsetDim(x, subsetName)

Arguments

x	ExperimentSubset Input ExperimentSubset object.
subsetName	character(1) Name of the subset to retrieve the dimensions from.

Value

A vector containing the dimensions of the specified subset i.e. the number of rows and the number of columns in the subset.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
subsetDim(es, "subset1")

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.