reducedDimNames: reducedDimNames

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

A wrapper to the reducedDimNames from reducedDims method with additional support for subsets.

Usage

reducedDimNames(x, ...)

## S4 method for signature 'ANY'
reducedDimNames(x, ...)

## S4 method for signature 'ANY'
reducedDimNames(x, ...)

## S4 method for signature 'ANY'
reducedDimNames(x, ...)

Arguments

x	Input ExperimentSubset object or any object supported by reducedDimNames from reducedDims method.
...	Additional arguments to pass to into the SCE method.

Value

The reducedDimNames from the specified subset or same as reducedDimNames from reducedDims when subsetName is missing.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es, "subset1",
rows = c(1:1500), cols = c(1:1500),
parentAssay = "counts")
reducedDims(es, subsetName = "subset1") <- list(
PCA_1 = scater::calculatePCA(assay(es, "subset1")),
PCA_2 = scater::calculatePCA(assay(es, "subset1")))
reducedDimNames(es, subsetName = "subset1")

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.