subsetAssayCount: Count method for subset assays in ExperimentSubset objects

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Get the count of the total available subsets and the subset assays inside these subsets in an ExperimentSubset object.

Usage

subsetAssayCount(x)

## S4 method for signature 'SubsetRangedSummarizedExperiment'
subsetAssayCount(x)

## S4 method for signature 'SubsetSingleCellExperiment'
subsetAssayCount(x)

## S4 method for signature 'SubsetSummarizedExperiment'
subsetAssayCount(x)

## S4 method for signature 'SubsetSpatialExperiment'
subsetAssayCount(x)

## S4 method for signature 'SubsetTreeSummarizedExperiment'
subsetAssayCount(x)

Arguments

x	ExperimentSubset Input ExperimentSubset object.

Value

A numeric value representing the sum of the subset count and subset assay count.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
assay(es, "subset1",
subsetAssayName = "subset1pAssay") <- assay(es, "subset1")[,] + 1
subsetAssayCount(es)

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.