subsetRowData: Accessor method for rowData from subsets in ExperimentSubset...

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Get rowData from a subset.

Set rowData to a subset.

Usage

subsetRowData(x, subsetName, parentRowData)

subsetRowData(x, subsetName) <- value

## S4 method for signature 'SubsetRangedSummarizedExperiment,character'
subsetRowData(x, subsetName, parentRowData)

## S4 replacement method for signature 
## 'SubsetRangedSummarizedExperiment,character,DataFrame'
subsetRowData(x, subsetName) <- value

## S4 method for signature 'SubsetSingleCellExperiment,character'
subsetRowData(x, subsetName, parentRowData)

## S4 replacement method for signature 'SubsetSingleCellExperiment,character,DataFrame'
subsetRowData(x, subsetName) <- value

## S4 replacement method for signature 'SubsetSummarizedExperiment,character,DataFrame'
subsetRowData(x, subsetName) <- value

## S4 method for signature 'SubsetSummarizedExperiment,character'
subsetRowData(x, subsetName, parentRowData)

## S4 method for signature 'SubsetSpatialExperiment,character'
subsetRowData(x, subsetName, parentRowData)

## S4 replacement method for signature 'SubsetSpatialExperiment,character,DataFrame'
subsetRowData(x, subsetName) <- value

## S4 method for signature 'SubsetTreeSummarizedExperiment,character'
subsetRowData(x, subsetName, parentRowData)

## S4 replacement method for signature 'SubsetTreeSummarizedExperiment,character,DataFrame'
subsetRowData(x, subsetName) <- value

Arguments

x	ExperimentSubset Input ExperimentSubset object.
subsetName	character(1) Name of the subset to set rowData to.
parentRowData	logical(1) Logical value indicating if parent rowData should be combined or not. Default FALSE.
value	Input DataFrame to store.

Value

The rowData from input object.

Input object with rowData stored.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
subsetRowData(es, "subset1")

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.