getSubsetAssay: Get subset assay from an 'ExperimentSubset' object.

Description Usage Arguments Value Examples

Description

Get subset assay from an ExperimentSubset object.

Usage

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getSubsetAssay(x, subsetName)

## S4 method for signature 'SubsetRangedSummarizedExperiment,character'
getSubsetAssay(x, subsetName)

## S4 method for signature 'SubsetSingleCellExperiment,character'
getSubsetAssay(x, subsetName)

## S4 method for signature 'SubsetSummarizedExperiment,character'
getSubsetAssay(x, subsetName)

## S4 method for signature 'SubsetSpatialExperiment,character'
getSubsetAssay(x, subsetName)

## S4 method for signature 'SubsetTreeSummarizedExperiment,character'
getSubsetAssay(x, subsetName)

Arguments

x

Input ExperimentSubset object.

subsetName

Specify 'subset name' or 'subset assay name' to fetch the assay from.

Value

Subset assay

Examples

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data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
getSubsetAssay(es, "subset1")

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.