subsetColData: Accessor method for colData from subsets in ExperimentSubset...

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Get colData from a subset.

Set colData to a subset.

Usage

subsetColData(x, subsetName, parentColData)

subsetColData(x, subsetName) <- value

## S4 method for signature 'SubsetRangedSummarizedExperiment,character'
subsetColData(x, subsetName, parentColData)

## S4 replacement method for signature 
## 'SubsetRangedSummarizedExperiment,character,DataFrame'
subsetColData(x, subsetName) <- value

## S4 method for signature 'SubsetSingleCellExperiment,character'
subsetColData(x, subsetName, parentColData)

## S4 replacement method for signature 'SubsetSingleCellExperiment,character,DataFrame'
subsetColData(x, subsetName) <- value

## S4 replacement method for signature 'SubsetSummarizedExperiment,character,DataFrame'
subsetColData(x, subsetName) <- value

## S4 method for signature 'SubsetSummarizedExperiment,character'
subsetColData(x, subsetName, parentColData)

## S4 method for signature 'SubsetSpatialExperiment,character'
subsetColData(x, subsetName, parentColData)

## S4 replacement method for signature 'SubsetSpatialExperiment,character,DataFrame'
subsetColData(x, subsetName) <- value

## S4 method for signature 'SubsetTreeSummarizedExperiment,character'
subsetColData(x, subsetName, parentColData)

## S4 replacement method for signature 'SubsetTreeSummarizedExperiment,character,DataFrame'
subsetColData(x, subsetName) <- value

Arguments

x	ExperimentSubset Input ExperimentSubset object.
subsetName	character(1) Name of the subset to set colData to.
parentColData	logical(1) Logical value indicating if parent colData should be combined or not. Default FALSE.
value	Input DataFrame to store.

Value

The colData from input object.

Input object with colData stored.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
subsetColData(es, "subset1")

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.