plot_differential_analysis: Compare exposures of annotated samples

In campbio/musicatk: Mutational Signature Comprehensive Analysis Toolkit

Compare exposures of annotated samples

Description

plot_differential_analysis is used to plot differential analysis created by exposure_differential_analysis.

Usage

plot_differential_analysis(analysis, analysis_type, samp_num)

Arguments

analysis	Analysis created by exposure_differential_analysis
analysis_type	Currently only "glm" supported
samp_num	Number of samples that went into the analysis

Value

Generates a ggplot object

Examples

data("res_annot")
analysis <- exposure_differential_analysis(res_annot,
  model_name = "res_annot",
  annotation = "Tumor_Subtypes", method = "wilcox"
)
plot_differential_analysis(analysis, "glm", 2)

campbio/musicatk documentation built on Dec. 25, 2024, 9:34 p.m.