subset_musica_by_counts: Creates a new musica subsetted to only samples with enough...

In campbio/musicatk: Mutational Signature Comprehensive Analysis Toolkit

Creates a new musica subsetted to only samples with enough variants

Description

Creates a new musica subsetted to only samples with enough variants

Usage

subset_musica_by_counts(musica, table_name, num_counts)

Arguments

musica	A musica object.
table_name	Name of table used for subsetting
num_counts	Minimum sum count value to drop samples

Value

Returns a new musica object with sample annotations, count tables, and variants subsetted to only contains samples with the specified minimum number of counts (column sums) in the specified table

Examples

data(musica_sbs96)
subset_musica_by_counts(musica_sbs96, "SBS96", 20)

campbio/musicatk documentation built on Oct. 22, 2023, 8:28 p.m.