tables: Retrieve the list of count_tables from a musica or...

In campbio/musicatk: Mutational Signature Comprehensive Analysis Toolkit

Retrieve the list of count_tables from a musica or musica_result object

Description

The count_tables contains standard and/or custom count tables created from variants

Usage

tables(object)

## S4 method for signature 'musica'
tables(object)

## S4 method for signature 'musica_result'
tables(object)

tables(musica) <- value

## S4 replacement method for signature 'musica,list'
tables(musica) <- value

Arguments

object	A musica object generated by the create_musica function or a musica_result object generated by a mutational discovery or prediction tool.
musica	A musica object generated by the create_musica function or a musica_result object generated by a mutational discovery or prediction tool.
value	A list of count_table objects representing counts of motifs in samples

Value

A list of count_tables

Examples

data(res)
tables(res)
data(musica)
tables(musica)

campbio/musicatk documentation built on Oct. 22, 2023, 8:28 p.m.