umap: Retrieve umap list from a result_model, result_collection, or...

In campbio/musicatk: Mutational Signature Comprehensive Analysis Toolkit

Retrieve umap list from a result_model, result_collection, or musica object

Description

The umap dataframes for the model

Usage

umap(x, ...)

## S4 method for signature 'musica'
umap(x, result, modality, model_id)

## S4 method for signature 'result_collection'
umap(x, modality, model_id)

## S4 method for signature 'result_model'
umap(x)

umap(x, ...) <- value

## S4 replacement method for signature 'musica,matrix'
umap(x, result, modality, model_id) <- value

## S4 replacement method for signature 'result_collection,matrix'
umap(x, modality, model_id) <- value

## S4 replacement method for signature 'result_model,matrix'
umap(x) <- value

Arguments

x	A musica, result_collection, or result_model object generated by a mutational discovery or prediction tool.
...	Other inputs
result	Name of result from result_list to assign the umap. Used when result is a musica object.
modality	Modality to assign the umap. Used when result is a musica or result_collection object.
model_id	Model identifier to assign the umap. Used when result is a musica or result_collection object.
value	A list of umap dataframes

Value

A list of umap dataframes

Examples

data(res)
umap(res, "result", "SBS96", "res")

campbio/musicatk documentation built on Dec. 25, 2024, 9:34 p.m.