Clonal_cluster: Extract the clonal cluster id for a patient.

In caravagn/revolver: REVOLVER - Repeated Evolution in Cancer

Extract the clonal cluster id for a patient.

Description

From a cohort object, this function return the id of the clonal cluster for a patient.

Usage

Clonal_cluster(x, p)

Arguments

x	A REVOLVER cohort.
p	The id of a patient in the cohort.

Value

The id of the clonal cluster for the patient.

See Also

Other Getters: CCF_clusters(), CCF(), Data(), Drivers(), ITransfer(), Phylo(), Samples(), Subclonal(), Truncal(), get_features()

Examples

# Data released in the 'evoverse.datasets'
data('TRACERx_NEJM_2017_REVOLVER', package = 'evoverse.datasets')

Clonal_cluster(TRACERx_NEJM_2017_REVOLVER, 'CRUK0002')

Clonal_cluster(TRACERx_NEJM_2017_REVOLVER, 'CRUK0008')

caravagn/revolver documentation built on May 21, 2022, 5:48 p.m.