plot_patient_mutation_burden: Plot the mutation burden for a patient.

In caravagn/revolver: REVOLVER - Repeated Evolution in Cancer

Plot the mutation burden for a patient.

Description

This function creates a scatterplot of a full cohort annotating clonal versus subclonal mutational burden, colouring each point by the number of total drivers in the patient, and using as shape the number of clones with drivers.

Usage

plot_patient_mutation_burden(x, patient, ...)

Arguments

x	A REVOLVER cohort object.
patient	A patient id.
...	Extra parameters, not used.

Value

A ggplot plot.

See Also

Other Plotting functions: distinct_palette_few(), distinct_palette_many(), gradient_palette(), plot_DET_index(), plot_clusters(), plot_dendrogram(), plot_drivers_clonality(), plot_drivers_graph(), plot_drivers_occurrence(), plot_jackknife_cluster_stability(), plot_jackknife_coclustering(), plot_jackknife_trajectories_stability(), plot_patient_CCF_histogram(), plot_patient_data(), plot_patient_oncoprint(), plot_patient_trees_scores()

Examples

# Data released in the 'evoverse.datasets'
data('TRACERx_NEJM_2017_REVOLVER', package = 'evoverse.datasets')
 
plot_patient_mutation_burden(TRACERx_NEJM_2017_REVOLVER, 'CRUK0001')
plot_patient_mutation_burden(TRACERx_NEJM_2017_REVOLVER, 'CRUK0002')

caravagn/revolver documentation built on May 21, 2022, 5:48 p.m.