plot_jackknife_trajectories_stability: Plot the patients' jackknife trajectory frequencies.

In caravagn/revolver: REVOLVER - Repeated Evolution in Cancer

Plot the patients' jackknife trajectory frequencies.

Description

This function plots a raster of the patients' jackknife co-clustering probability.

The input matrix to this function can be obtained via Jackknife_patient_coclustering; in the visualisation the patient ids are coloured and ordered according to the clusters in the input dataset, which can be obtained via Cluster.

Usage

plot_jackknife_trajectories_stability(
  x,
  annotate_probability = 0.9,
  annotate_percentage = 0.2
)

Arguments

x	A REVOLVER cohort with fits, clusters and jackknife results available.
cluster_palette	A palette of colours; must be a function that when applied to a number it returns that number of colours.

Value

A ggplot figure.

See Also

Other Plotting functions: distinct_palette_few(), distinct_palette_many(), gradient_palette(), plot_DET_index(), plot_clusters(), plot_dendrogram(), plot_drivers_clonality(), plot_drivers_graph(), plot_drivers_occurrence(), plot_jackknife_cluster_stability(), plot_jackknife_coclustering(), plot_patient_CCF_histogram(), plot_patient_data(), plot_patient_mutation_burden(), plot_patient_oncoprint(), plot_patient_trees_scores()

Examples

# Data released in the 'evoverse.datasets'
data('TRACERx_NEJM_2017_REVOLVER', package = 'evoverse.datasets')

plot_jackknife_trajectories_stability(TRACERx_NEJM_2017_REVOLVER)

caravagn/revolver documentation built on May 21, 2022, 5:48 p.m.