plot_jackknife_cluster_stability: Plot the patients' jackknife cluster staability

In caravagn/revolver: REVOLVER - Repeated Evolution in Cancer

Plot the patients' jackknife cluster staability

Description

This function plots a barplot of the patients' jackknife cluster staability.

The input vactor to this function can be obtained via Jackknife_cluster_stability; in the visualisation the clusters are ordered by staability.

Usage

plot_jackknife_cluster_stability(x, cluster_palette = distinct_palette_few)

Arguments

x	A REVOLVER cohort with fits, clusters and jackknife results available.
cluster_palette	A palette of colours; must be a function that when applied to a number it returns that number of colours.

Value

A ggplot figure.

See Also

Other Plotting functions: distinct_palette_few(), distinct_palette_many(), gradient_palette(), plot_DET_index(), plot_clusters(), plot_dendrogram(), plot_drivers_clonality(), plot_drivers_graph(), plot_drivers_occurrence(), plot_jackknife_coclustering(), plot_jackknife_trajectories_stability(), plot_patient_CCF_histogram(), plot_patient_data(), plot_patient_mutation_burden(), plot_patient_oncoprint(), plot_patient_trees_scores()

Examples

# Data released in the 'evoverse.datasets'
data('TRACERx_NEJM_2017_REVOLVER', package = 'evoverse.datasets')

plot_jackknife_cluster_stability(TRACERx_NEJM_2017_REVOLVER)

caravagn/revolver documentation built on May 21, 2022, 5:48 p.m.