plot_patient_trees: Plot REVOLVER trees for a patient.

In caravagn/revolver: REVOLVER - Repeated Evolution in Cancer

Plot REVOLVER trees for a patient.

Description

This function is like plot_data, as it uses base plotting functions to assemble a summary plot for a patient. This function assembled the plot via ggpubr. The first line of plots represents the top tree for a patient, and its information transfer. The strip below represents up to the top-10 trees for this patient, as they are obtained from the standard tree-scoring (which means that the score is not accounting for the actual transfer, but just for the tree structure).

Usage

plot_patient_trees(x, patient, ...)

Arguments

x	A REVOLVER cohort object
patient	The patient for which the trees should be plot
...	Extra parameters, not used.

Value

A figure assembled with ggpubr.

Examples

# Data released in the 'evoverse.datasets'
data('TRACERx_NEJM_2017_REVOLVER', package = 'evoverse.datasets')

# This returns a figure assembled with ggpubr
plot_patient_trees(TRACERx_NEJM_2017_REVOLVER, patient = 'CRUK0002')

caravagn/revolver documentation built on May 21, 2022, 5:48 p.m.