plot_patient_oncoprint: Plot the oncoprint for a patient.

In caravagn/revolver: REVOLVER - Repeated Evolution in Cancer

Plot the oncoprint for a patient.

Description

Canonical oncoprint

Usage

plot_patient_oncoprint(x, patient, clusters_palette = distinct_palette_many)

Arguments

x	A REVOLVER cohort object.
patient	The id of a patient.
clusters_palette	A palette function that should return the colour of an arbitrary number of clusters.

Value

A figure assembled with ggpubr which combines multiple ggplot tile plots.

See Also

Other Plotting functions: distinct_palette_few(), distinct_palette_many(), gradient_palette(), plot_DET_index(), plot_clusters(), plot_dendrogram(), plot_drivers_clonality(), plot_drivers_graph(), plot_drivers_occurrence(), plot_jackknife_cluster_stability(), plot_jackknife_coclustering(), plot_jackknife_trajectories_stability(), plot_patient_CCF_histogram(), plot_patient_data(), plot_patient_mutation_burden(), plot_patient_trees_scores()

Examples

# Data released in the 'evoverse.datasets'
data('TRACERx_NEJM_2017_REVOLVER', package = 'evoverse.datasets')
 
plot_patient_oncoprint(TRACERx_NEJM_2017_REVOLVER, 'CRUK0001')
plot_patient_oncoprint(TRACERx_NEJM_2017_REVOLVER, 'CRUK0002')

caravagn/revolver documentation built on May 21, 2022, 5:48 p.m.