BASiCS_MockSCE: Create a mock SingleCellExperiment object.

In catavallejos/BASiCS: Bayesian Analysis of Single-Cell Sequencing data

Create a mock SingleCellExperiment object.

Description

Creates a SingleCellExperiment object of Poisson-distributed approximating a homogeneous cell population.

Usage

BASiCS_MockSCE(
  NGenes = 100,
  NCells = 100,
  NSpikes = 20,
  WithBatch = TRUE,
  MeanMu = 1
)

Arguments

NGenes	Integer value specifying the number of genes that will be present in the output.
NCells	Integer value specifying the number of cells that will be present in the output.
NSpikes	Integer value specifying the number of spike-in genes that will be present in the output.
WithBatch	Logical value specifying whether a dummy BatchInfo is included in the output.
MeanMu	The log mean used to generate per-gene mean expression levels.

Value

A SingleCellExperiment object.

Examples

BASiCS_MockSCE()

catavallejos/BASiCS documentation built on March 27, 2024, 12:49 a.m.