BASiCS_Result: The BASiCS_Result class
In catavallejos/BASiCS: Bayesian Analysis of Single-Cell Sequencing data

BASiCS_Result

R Documentation

The BASiCS_Result class

Description

Container of results for a single test (HVG/LVG/DE). This should be an abstract class (but this is R so no) and shouldn't be directly instantiated. Defines a very small amount of common behaviour for BASiCS_ResultDE and BASiCS_ResultVG.

Slots

Table: Tabular results for each gene.
Name: The name of the test performed (typically "Mean", "Disp" or "ResDisp")
ProbThreshold: Posterior probability threshold used in differential test.
EFDR,EFNR: Expected false discovery and expected false negative rates for differential test.
Extra: Additional objects for class flexibility.