format-methods: Methods for formatting BASiCS_Result and BASiCS_ResultsDE...

format,BASiCS_ResultsDE-methodR Documentation

Methods for formatting BASiCS_Result and BASiCS_ResultsDE objects.

Description

Methods for formatting BASiCS_Result and BASiCS_ResultsDE objects.

Usage

## S4 method for signature 'BASiCS_ResultsDE'
format(x, Parameter, Filter = TRUE, ProbThreshold = NULL, ...)

## S4 method for signature 'BASiCS_ResultDE'
format(x, Filter = TRUE, ProbThreshold = NULL, ...)

## S4 method for signature 'BASiCS_ResultVG'
format(x, Filter = TRUE, ProbThreshold = NULL, ...)

Arguments

x

Object being subsetted.

Parameter

Character scalar indicating which of the BASiCS_Result should be formatted.

Filter

Logical scalar indicating whether results should be filtered based on differential expression or HVG/LVG status if ProbThreshold=NULL, or a probability threshold if ProbThreshold=NULL

ProbThreshold

Probability threshold to be used if Filter=TRUE

...

Passed to format.

Value

A data.frame.


catavallejos/BASiCS documentation built on March 27, 2024, 12:49 a.m.