BASiCS_ResultDE: The BASiCS_ResultDE class

In catavallejos/BASiCS: Bayesian Analysis of Single-Cell Sequencing data

The BASiCS_ResultDE class

Description

Container of results for a single differential test.

Slots

Table

Tabular results for each gene.

Name

The name of the test performed (typically "Mean", "Disp" or "ResDisp")

GroupLabel1,GroupLabel2

Group labels.

ProbThreshold

Posterior probability threshold used in differential test.

EFDR,EFNR

Expected false discovery and expected false negative rates for differential test.

EFDRgrid,EFNRgrid

Grid of EFDR and EFNR values calculated before thresholds were fixed.

Epsilon

Minimum fold change or difference threshold.

Extra

objects for class flexibility.

catavallejos/BASiCS documentation built on March 27, 2024, 12:49 a.m.