Files in catavallejos/BASiCS
Bayesian Analysis of Single-Cell Sequencing data

.Rbuildignore
.gitattributes
.gitignore
BASiCS.Rproj
DESCRIPTION
NAMESPACE
NEWS
R/.Rapp.history
R/AllGenerics.R R/BASiCS_D_TestDE.R R/BASiCS_DenoisedCounts.R R/BASiCS_DenoisedRates.R R/BASiCS_DetectHVG_LVG.R R/BASiCS_Filter.R R/BASiCS_LoadChain.R R/BASiCS_MCMC.R R/BASiCS_Sim.R R/BASiCS_TestDE.R R/BASiCS_VarThresholdSearchHVG_LVG.R R/BASiCS_VarianceDecomp.R R/Classes.R R/HiddenBASiCS_MCMC_ExtraArgs.R R/HiddenBASiCS_MCMC_InputCheck.R R/HiddenBASiCS_MCMC_NoSpikesParams.R R/HiddenBASiCS_MCMC_OutputStore.R R/HiddenBASiCS_MCMC_RefFreqStore.R R/HiddenBASiCS_MCMC_Start.R R/HiddenChecksBASiCS_Data.R R/HiddenEFDR_EFNR.R R/HiddenHeaderDetectHVG_LVG.R R/HiddenHeaderTest_DE.R R/HiddenPlotsDetectHVG_LVG.R R/HiddenThresholdSearchDetectHVL_LVG.R R/HiddenThresholdSearchTestDE.R R/HiddenVarDecomp.R R/Methods.R R/RcppExports.R R/data.R R/makeExampleBASiCS_Data.R R/newBASiCS_Chain.R R/newBASiCS_Data.R R/welcome.R README.md
data/ChainRNA.rda
data/ChainRNAReg.rda
data/ChainSC.rda
data/ChainSCReg.rda
man/.DS_Store
man/.Rapp.history
man/BASiCS_Chain-methods.Rd man/BASiCS_Chain.Rd man/BASiCS_D_TestDE.Rd man/BASiCS_DenoisedCounts.Rd man/BASiCS_DenoisedRates.Rd man/BASiCS_DetectHVG_LVG.Rd man/BASiCS_Filter.Rd man/BASiCS_LoadChain.Rd man/BASiCS_MCMC.Rd man/BASiCS_Sim.Rd man/BASiCS_Summary-methods.Rd man/BASiCS_Summary.Rd man/BASiCS_TestDE.Rd man/BASiCS_VarThresholdSearchHVG_LVG.Rd man/BASiCS_VarianceDecomp.Rd man/BASiCS_showFit-BASiCS_Chain-method.Rd man/ChainRNA.Rd man/ChainRNAReg.Rd man/ChainSC.Rd man/ChainSCReg.Rd man/Summary-BASiCS_Chain-method.Rd man/displayChainBASiCS-BASiCS_Chain-method.Rd man/displaySummaryBASiCS-BASiCS_Summary-method.Rd man/makeExampleBASiCS_Data.Rd man/newBASiCS_Chain.Rd man/newBASiCS_Data.Rd man/plot-BASiCS_Chain-method.Rd man/plot-BASiCS_Summary-method.Rd man/subset-BASiCS_Chain-method.Rd
src/.DS_Store
src/.gitignore
src/BASiCS_CPPcode.cpp
src/Makevars
src/Makevars.win
src/RcppExports.cpp
tests/testthat.R
tests/testthat/.Rapp.history
tests/testthat/test_denoised_counts.R tests/testthat/test_denoised_rates.R tests/testthat/test_differential_test.R tests/testthat/test_differential_test_reg.R tests/testthat/test_lvg_hvg.R tests/testthat/test_parameter_estimation.R tests/testthat/test_parameter_estimation_batch.R tests/testthat/test_parameter_estimation_no_spike.R tests/testthat/test_parameter_estimation_no_spike_2.R tests/testthat/test_parameter_estimation_reg_no_spike.R tests/testthat/test_parameter_estimation_regression.R
vignettes/.DS_Store
vignettes/.gitignore
vignettes/AlternativeModels.png
vignettes/BASiCS.Rmd
vignettes/BASiCS_DAG.jpg
vignettes/library.bib
catavallejos/BASiCS documentation built on Dec. 22, 2017, 1:20 p.m.