Files in catavallejos/BASiCS
Bayesian Analysis of Single-Cell Sequencing data
.Rbuildignore
.gitattributes
.github/workflows/R-CMD-check.yaml
.gitignore
.travis.yml
BASiCS.Rproj
DESCRIPTION
Dockerfile
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/BASiCS_CalculateERCC.R
R/BASiCS_CorrectOffset.R
R/BASiCS_DenoisedCounts.R
R/BASiCS_DenoisedRates.R
R/BASiCS_DetectHVG_LVG.R
R/BASiCS_DiagHist.R
R/BASiCS_DiagPlot.R
R/BASiCS_DivideAndConquer.R
R/BASiCS_Draw.R
R/BASiCS_EffectiveSize.R
R/BASiCS_Filter.R
R/BASiCS_LoadChain.R
R/BASiCS_MCMC.R
R/BASiCS_MockSCE.R
R/BASiCS_Package.R
R/BASiCS_PlotDE.R
R/BASiCS_PlotOffset.R
R/BASiCS_PlotVG.R
R/BASiCS_PlotVarianceDecomp.R
R/BASiCS_PriorParam.R
R/BASiCS_ShowFit.R
R/BASiCS_Sim.R
R/BASiCS_TestDE.R
R/BASiCS_VarThresholdSearchHVG_LVG.R
R/BASiCS_VarianceDecomp.R
R/HiddenBASiCS_Sim.R
R/HiddenHeaderBASiCS_Sim.R
R/HiddenHeaderTest_DE.R
R/HiddenVarDecomp.R
R/Methods.R
R/RcppExports.R
R/data.R
R/makeExampleBASiCS_Data.R
R/newBASiCS_Chain.R
R/newBASiCS_Data.R
R/utils_Data.R
R/utils_DivideAndConquer.R
R/utils_MCMC.R
R/utils_Misc.R
R/utils_Store.R
R/utils_Tests.R
R/utils_VG.R
R/welcome.R
README.md
data/ChainRNA.rda
data/ChainRNAReg.rda
data/ChainSC.rda
data/ChainSCReg.rda
inst/CITATION
man/.DS_Store
man/.Rapp.history
man/BASiCS-defunct.Rd
man/BASiCS_CalculateERCC.Rd
man/BASiCS_Chain-methods.Rd
man/BASiCS_Chain.Rd
man/BASiCS_CorrectOffset.Rd
man/BASiCS_DenoisedCounts.Rd
man/BASiCS_DenoisedRates.Rd
man/BASiCS_DetectVG.Rd
man/BASiCS_DiagHist.Rd
man/BASiCS_DiagPlot.Rd
man/BASiCS_DivideAndConquer.Rd
man/BASiCS_Draw.Rd
man/BASiCS_EffectiveSize.Rd
man/BASiCS_Filter.Rd
man/BASiCS_LoadChain.Rd
man/BASiCS_MCMC.Rd
man/BASiCS_MockSCE.Rd
man/BASiCS_PlotDE.Rd
man/BASiCS_PlotOffset.Rd
man/BASiCS_PlotVG.Rd
man/BASiCS_PlotVarianceDecomp.Rd
man/BASiCS_PriorParam.Rd
man/BASiCS_Result.Rd
man/BASiCS_ResultDE.Rd
man/BASiCS_ResultVG.Rd
man/BASiCS_ResultsDE.Rd
man/BASiCS_ShowFit.Rd
man/BASiCS_Sim.Rd
man/BASiCS_Summary-methods.Rd
man/BASiCS_Summary.Rd
man/BASiCS_TestDE.Rd
man/BASiCS_VarThresholdSearchHVG_LVG.Rd
man/BASiCS_VarianceDecomp.Rd
man/ChainRNA.Rd
man/ChainRNAReg.Rd
man/ChainSC.Rd
man/ChainSCReg.Rd
man/Summary-BASiCS_Chain-method.Rd
man/as.data.frame-methods.Rd
man/dim-BASiCS_Chain-method.Rd
man/dimnames-BASiCS_Chain-method.Rd
man/displayChainBASiCS-BASiCS_Chain-method.Rd
man/displaySummaryBASiCS-BASiCS_Summary-method.Rd
man/dot-generateSubsets.Rd
man/format-methods.Rd
man/makeExampleBASiCS_Data.Rd
man/newBASiCS_Chain.Rd
man/newBASiCS_Data.Rd
man/plot-BASiCS_Chain-method.Rd
man/plot-BASiCS_Summary-method.Rd
man/rowData.Rd
man/show-BASiCS_ResultDE-method.Rd
man/show-BASiCS_ResultVG-method.Rd
man/show-BASiCS_ResultsDE-method.Rd
man/subset-BASiCS_Chain-method.Rd
man/subset-methods.Rd
src/.DS_Store
src/.gitignore
src/BASiCS.cpp
src/DenoisedRates.h
src/MCMC.h
src/MCMCNoSpikes.h
src/MCMCReg.h
src/MCMCRegNoSpikes.h
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/libraries.h
src/updates.h
src/updatesNoSpikes.h
src/updatesReg.h
src/updatesRegNoSpikes.h
src/utils.h
tests/testthat.R
tests/testthat/.Rapp.history
tests/testthat/helper.R
tests/testthat/test_data.R
tests/testthat/test_data_examples.R
tests/testthat/test_denoised.R
tests/testthat/test_differential_test.R
tests/testthat/test_differential_test_reg.R
tests/testthat/test_divide_and_conquer.R
tests/testthat/test_ess.R
tests/testthat/test_filter.R
tests/testthat/test_individual_updates.R
tests/testthat/test_individual_updates_eb.R
tests/testthat/test_lvg_hvg.R
tests/testthat/test_mcmc_arguments.R
tests/testthat/test_mcmc_start.R
tests/testthat/test_mcmc_storage.R
tests/testthat/test_methods.R
tests/testthat/test_misc.R
tests/testthat/test_parameter_estimation.R
tests/testthat/test_parameter_estimation_batch.R
tests/testthat/test_parameter_estimation_no_spike.R
tests/testthat/test_parameter_estimation_no_spike_2.R
tests/testthat/test_parameter_estimation_reg_no_spike.R
tests/testthat/test_parameter_estimation_regression.R
tests/testthat/test_plot.R
tests/testthat/test_rbf.R
tests/testthat/test_scran.R
tests/testthat/test_sim.R
tests/testthat/test_vardecomp.R
vignettes/.DS_Store
vignettes/.gitignore
vignettes/AlternativeModels.png
vignettes/BASiCS.Rmd
vignettes/BASiCS_DAG.jpg
vignettes/BASiCS_sticker.png
vignettes/library.bib
