plot-BASiCS_Chain-method: 'plot' method for BASiCS_Chain objects

In catavallejos/BASiCS: Bayesian Analysis of Single-Cell Sequencing data

'plot' method for BASiCS_Chain objects

Description

'plot' method for BASiCS_Chain objects

Usage

## S4 method for signature 'BASiCS_Chain,ANY'
plot(
  x,
  Parameter = "mu",
  Gene = NULL,
  Cell = NULL,
  Batch = 1,
  RegressionTerm = NULL,
  ...
)

Arguments

x	A BASiCS_Chain object.
Parameter	Name of the slot to be used for the plot. Possible values: 'mu', 'delta', 'phi', 's', 'nu', 'theta', 'beta', 'sigma2' and 'epsilon'.
Gene	Specifies which gene is requested. Required only if Parameter = 'mu' or 'delta'
Cell	Specifies which cell is requested. Required only if Parameter = 'phi', 's' or 'nu'
Batch	Specifies which batch is requested. Required only if Parameter = 'theta'
RegressionTerm	Specifies which regression coefficient is requested. Required only if Parameter = 'beta'
...	Unused.

Value

A plot object

Author(s)

Catalina A. Vallejos [e-mail]

Nils Eling [e-mail]

Examples

help(BASiCS_MCMC)

catavallejos/BASiCS documentation built on March 27, 2024, 12:49 a.m.