Files in ccbiolab/svpluscnv
svpluscnv: analysis and visualization of complex structural variation data
.DS_Store
.Rhistory
DESCRIPTION
NAMESPACE
R/break.annot.r
R/breakpoint.density.r
R/brk.burden.iqm.r
R/chr.arm.cnv.r
R/circular.plot.r
R/clean.cnv.artifact.r
R/cnv.freq.plot.r
R/freq.p.test.r
R/gene.cnv.r
R/gene.track.view.r
R/get.genesgr.r
R/hot.spot.samples.R
R/internal_functions.r
R/pct.genome.changed.r
R/segment.means.r
R/shattered.map.plot.r
R/shattered.regions.cnv.r
R/shattered.regions.r
R/sv.model.view.r
R/svpluscnv.data.r
R/validate.input.data.r
README.Rmd
README.md
data/.DS_Store
data/datalist
data/svpluscnv_data.rda
figure/.DS_Store
figure/plot_readme_1-1.png
figure/plot_readme_10-1.png
figure/plot_readme_2-1.png
figure/plot_readme_3-1.png
figure/plot_readme_3b-1.png
figure/plot_readme_3c-1.png
figure/plot_readme_3d-1.png
figure/plot_readme_4-1.png
figure/plot_readme_5-1.png
figure/plot_readme_6-1.png
figure/plot_readme_7-1.png
figure/plot_readme_8-1.png
figure/plot_readme_9-1.png
man/.Rapp.history
man/IQM.Rd
man/IQSD.Rd
man/amp.del.Rd
man/ave.segmean.Rd
man/bed2chromo.reg.Rd
man/break.annot-class.Rd
man/break.density.Rd
man/break.iqm-class.Rd
man/breaks-class.Rd
man/brk.burden.iqm.Rd
man/chr.arm.cnv.Rd
man/chr.sort.Rd
man/chromo.regs-class.Rd
man/chromosome.limit.coords.Rd
man/circ.chromo.plot.Rd
man/circ.wg.plot.Rd
man/clean.cnv.artifact.Rd
man/cnv.break.annot.Rd
man/cnv.breaks.Rd
man/cnv.freq.Rd
man/cnv_blacklist_regions.Rd
man/cnvfreq-class.Rd
man/createRandomString.Rd
man/d3gb.chr.lim.Rd
man/dngr.Rd
man/extract.bins-methods.Rd
man/freq.p.test.Rd
man/freq.threshold-methods.Rd
man/gene.cnv.Rd
man/gene.symbol.info-methods.Rd
man/gene.track.view.Rd
man/geneBreakOverlap.Rd
man/genecnv-class.Rd
man/get.chr.bins.Rd
man/get.genesgr.Rd
man/hbd.mat-methods.Rd
man/hot.spot.samples.Rd
man/map2color.Rd
man/match.breaks.Rd
man/med.segmean.Rd
man/merge2lists.Rd
man/nbl_segdat.Rd
man/nbl_svdat.Rd
man/null.freq-class.Rd
man/pct.genome.changed.Rd
man/refSeqDat-class.Rd
man/refseq_hg19.Rd
man/refseq_hg38.Rd
man/segdat_lung_ccle.Rd
man/segment.gap.Rd
man/shattered.eval.Rd
man/shattered.map.plot.Rd
man/shattered.regions.Rd
man/shattered.regions.cnv.Rd
man/sv.model.view.Rd
man/svc.break.annot.Rd
man/svc.breaks.Rd
man/svcnvio-class.Rd
man/svdat_lung_ccle.Rd
man/upgr.Rd
man/validate.cnv.Rd
man/validate.svc.Rd
svpluscnv-manual.pdf
vignettes/.DS_Store
vignettes/.Rhistory
vignettes/figure/plot_vignette_1-1.png
vignettes/figure/plot_vignette_2-1.png
vignettes/figure/plot_vignette_3-1.png
vignettes/figure/plot_vignette_4-1.png
vignettes/orthogonal_breast_data.Rmd
vignettes/orthogonal_breast_data.md
