context("Tests for location get and update")
rm(list=ls())
verbose <- FALSE
#setup to work with environment
instance <<- "test_environments/5-2-2.json"
test_that(paste("test log in and get an entity", instance),
{
verbose <- FALSE
api <- CoreAPIV2::coreAPI(instance)
con<- CoreAPIV2::authBasic(api,useVerbose=verbose)
expect_match(api$coreUrl,con$coreApi$coreUrl,all=verbose)
expect_that(is.null(con$coreApi$jsessionId),equals(FALSE))
b<-CoreAPIV2::getEntityByBarcode(con$coreApi,"PATIENT_SAMPLE","PS1",fullMetadata=FALSE,useVerbose=verbose)$entity
expect_match(b$Barcode,"PS1",all=verbose)
lc<-CoreAPIV2::updateEntityLocation(con$coreApi,"PATIENT_SAMPLE","PS1","LC1",useVerbose=FALSE)
expect_match( httr::http_status(lc$response)$category,"Success")
lc1<-CoreAPIV2::getEntityLocation(con$coreApi,"PATIENT_SAMPLE","PS1",useVerbose=FALSE)
expect_match(lc1$entity[[1]]$Barcode,"LC1")
lc<-CoreAPIV2::updateEntityLocation(con$coreApi,"PATIENT_SAMPLE","PS1","LC2",useVerbose=TRUE)
expect_match( httr::http_status(lc$response)$category,"Success")
lc1<-CoreAPIV2::getEntityLocation(con$coreApi,"PATIENT_SAMPLE","PS1",useVerbose=FALSE)
expect_match(lc1$entity[[1]]$Barcode,"LC2")
logout<-CoreAPIV2::logOut(con$coreApi,useVerbose = verbose)
expect_match(logout$success,"Success")
})
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