EnumerateTriNucCounts: EnumerateTriNucCounts
In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts
View source: R/firevat_utils.R
EnumerateTriNucCounts R Documentation
EnumerateTriNucCounts
Description
Returns C>A, C>G, C>T, T>A, T>C, T>G counts
Usage
EnumerateTriNucCounts(spectrum)
Arguments
spectrum
a numeric vector with 96 numeric values
Details
Please note that this function assumes that 'spectrum' is sorted
(i.e. 1:16 –> C>A;
17:32 –> C>G;
33:48 –> C>T;
49:64 –> T>A;
65:80 –> T>C;
81:96 –> T>G)
Value
a numeric vector of length 6 corresponding to the counts of each trinucleotide change (C>A, C>G, C>T, T>A, T>C, T>G)
cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.
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View source: R/firevat_utils.R
| EnumerateTriNucCounts | R Documentation |
EnumerateTriNucCounts
Description
Returns C>A, C>G, C>T, T>A, T>C, T>G counts
Usage
EnumerateTriNucCounts(spectrum)
Arguments
spectrum |
a numeric vector with 96 numeric values |
Details
Please note that this function assumes that 'spectrum' is sorted (i.e. 1:16 –> C>A; 17:32 –> C>G; 33:48 –> C>T; 49:64 –> T>A; 65:80 –> T>C; 81:96 –> T>G)
Value
a numeric vector of length 6 corresponding to the counts of each trinucleotide change (C>A, C>G, C>T, T>A, T>C, T>G)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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