InitializeVCF: InitializeVCF
In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts
InitializeVCF R Documentation
InitializeVCF
Description
Initialize VCF with FIREVAT config file
This functions selects point mutations and
appends filter values to vcf.obj$data
Usage
InitializeVCF(vcf.obj, config.obj, verbose = TRUE)
Arguments
vcf.obj
A list from ReadVCF
config.obj
A list from ParseConfigFile
verbose
If true, provides process detail
Value
A list with the following elements
vcf.obj.filteredvcf.obj (high-quality vcf)
vcf.obj.artifactvcf.obj (low-quality vcf)
cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.
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| InitializeVCF | R Documentation |
InitializeVCF
Description
Initialize VCF with FIREVAT config file This functions selects point mutations and appends filter values to vcf.obj$data
Usage
InitializeVCF(vcf.obj, config.obj, verbose = TRUE)
Arguments
vcf.obj |
A list from ReadVCF |
config.obj |
A list from ParseConfigFile |
verbose |
If true, provides process detail |
Value
A list with the following elements
vcf.obj.filteredvcf.obj (high-quality vcf)
vcf.obj.artifactvcf.obj (low-quality vcf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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