InitializeVCF: InitializeVCF

View source: R/firevat_vcf.R

InitializeVCFR Documentation

InitializeVCF

Description

Initialize VCF with FIREVAT config file This functions selects point mutations and appends filter values to vcf.obj$data

Usage

InitializeVCF(vcf.obj, config.obj, verbose = TRUE)

Arguments

vcf.obj

A list from ReadVCF

config.obj

A list from ParseConfigFile

verbose

If true, provides process detail

Value

A list with the following elements

  • vcf.obj.filteredvcf.obj (high-quality vcf)

  • vcf.obj.artifactvcf.obj (low-quality vcf)


cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.