GetOptimizedSignatures: GetOptimizedSignatures
In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts
View source: R/firevat_report.R
GetOptimizedSignatures R Documentation
GetOptimizedSignatures
Description
This function fetches the last row from the optimization iteration log
and returns the target and artifactual mutational signatures
for the type of mutations ('refined' or 'artifactual')
Usage
GetOptimizedSignatures(data, mutations.type = "refined", signatures = "all")
Arguments
data
A list of main data from RunFIREVAT
mutations.type
A string for type of mutations ('refined' or 'artifact')
signatures
A string ('all', 'target', 'artifact')
Value
A data.frame with the columns 'signature' and 'weight'
cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.
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View source: R/firevat_report.R
| GetOptimizedSignatures | R Documentation |
GetOptimizedSignatures
Description
This function fetches the last row from the optimization iteration log and returns the target and artifactual mutational signatures for the type of mutations ('refined' or 'artifactual')
Usage
GetOptimizedSignatures(data, mutations.type = "refined", signatures = "all")
Arguments
data |
A list of main data from |
mutations.type |
A string for type of mutations ('refined' or 'artifact') |
signatures |
A string ('all', 'target', 'artifact') |
Value
A data.frame with the columns 'signature' and 'weight'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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