GenerateConfigObj: Generate config.obj by checking vcf header

In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts

Generate config.obj by checking vcf header

Description

This function generate config.obj by checking vcf header. Users should fill in the information needed in console. In current version, only Integers & Float values can be used in config.obj for running FIREVAT.

Usage

GenerateConfigObj(
  vcf.obj,
  save.config = TRUE,
  config.path = "../temp/FIREVAT_configure.json"
)

Arguments

vcf.obj	A list from ReadVCF
save.config	If true, save config.obj to config.path
config.path	File path to write config.obj (json or yaml)

Value

config.obj

cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.