GAOptimizationObjFnHelper: GAOptimizationObjFnHelper

In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts

GAOptimizationObjFnHelper

Description

Objective helper function for FIREVAT optimization

Usage

GAOptimizationObjFnHelper(params.x, data)

Arguments

params.x	= representation of parameter values
data	A list with the following data "vcf.obj"ReadVCF "vcf.filter"a list "vcf.calling.method"string value "df.ref.mut.sig"a data.frame "target.mut.sigs"a character vector "sequencing.artifact.mut.sigs"a charcter vector "config.obj"ParseConfigFile

Value

A list with the following elements

• C.filterednumeric value

• A.filterednumeric value

• P.filterednumeric value

• C.artifactnumeric value

• A.artifactnumeric value

• P.artifactnumeric value

• obj.valobj.val

• xx (numeric vector of GA parameter values)

• original mutationsnumeric value

• filtered.mutationsnumeric value

• artifact.mutationsnumeric value

• sequencing.artifact.signaturescharacter vector (of signature names)

• sequencing.artifact.signatures.weightsnumeric vector

cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.