MutPatParseRefMutSigs: MutPatParseRefMutSigs

In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts

MutPatParseRefMutSigs

Description

Parses a df.ref.mut.sigs and prepares it to run Mutational Patterns.

Usage

MutPatParseRefMutSigs(
  df.ref.mut.sigs,
  target.mut.sigs,
  signature.start.column.index = 4,
  mutation.type.header = "SomaticMutationType"
)

Arguments

df.ref.mut.sigs	A data.frame of reference mutational signatures
target.mut.sigs	A character vector of target mutational signatures names
signature.start.column.index	= An integer value (e.g. column index corresponding to 'SBS1')
mutation.type.header	= A string value (name of header corresponding to column containing 'A[C>A]A' data))

Value

A data.frame of the format deconstructSigs::signatures.cosmic

cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.