GetParameterLowerUpperVector: GetParameterLowerUpperVector

In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts

GetParameterLowerUpperVector

Description

Return a lower/upper vector needed to conduct FIREVAT GA real-valued optimization.

Usage

GetParameterLowerUpperVector(vcf.obj, config.obj, vcf.filter, multiplier = 100)

Arguments

vcf.obj	A list from ReadVCF
config.obj	A list from ParseConfigFile
vcf.filter	A list from MakeMuTect2Filter
multiplier	A multiplier for convert fraction to integer (default = 100)

Details

vcf.obj$data: if max(vcf.obj$data[[param]]) < 1, then multiply multiplier to the vector

Value

A list with the elements

• lower.vector A numeric vector. Each element is the minimum value of each parameter

• upper.vector A numeric vector. Each element is the maximum value of each parameter

• vcf.obj vcf.obj with updated data

cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.