Files in chapmandu2/CancerCellLines

Analysis of cancer cell line data

.Rbuildignore

CancerCellLines.Rproj

DESCRIPTION

NAMESPACE

R/ToyDataFunctions.R R/dietlein_data-data.R R/getAffyData.R R/getCopyNumberData.R R/getCosmicCLPData.R R/getDrugData_CCLE.R R/getDrugData_custom.R R/getHybcapData.R R/getResponseData.R R/getTissueCellLines.R R/getTissueInfo.R R/importCCLE_affy.R R/importCCLE_cn.R R/importCCLE_drugresponse.R R/importCCLE_hybcap.R R/importCCLE_info.R R/importCellLineIDs.R R/importCosmicCLP_exome.R R/makeGeneticVsGeneticDataFrame.R R/makeRespVsGeneticDataFrame.R R/makeRespVsRespDataFrame.R R/makeTallDataFrame.R R/makeToyDB.R R/makeWideDataFrame.R R/makeWideFromRespVsRespDataFrame.R R/makeWideFromTallDataFrame.R R/plotGeneticVsGeneticHist.R R/plotGeneticVsGeneticPoint.R R/plotHeatmap.R R/plotRespVsGeneticHist.R R/plotRespVsGeneticPoint.R R/plotRespVsRespDensity.R R/plotRespVsRespPairs.R R/plotRespVsRespWaterfall.R R/setupSQLite.R R/shinyGeneticVsGeneticApp.R R/shinyGeneticVsGeneticServer.R R/shinyGeneticVsGeneticUI.R R/shinyRespVsGeneticApp.R R/shinyRespVsGeneticServer.R R/shinyRespVsGeneticUI.R R/shinyRespVsRespApp.R R/shinyRespVsRespServer.R R/shinyRespVsRespUI.R data-raw/InternalDataScript.R data-raw/ToyDataScript.R

data/dietlein_data.rda

examples/overview_example.R examples/visualsations_example.R inst/doc/overview.R inst/doc/overview.Rmd

inst/doc/overview.html

inst/doc/visualisations.R inst/doc/visualisations.Rmd

inst/doc/visualisations.html

inst/extdata/CCLE_Expression_Entrez_2012-09-29_toy.gct

inst/extdata/CCLE_NP24.2009_Drug_data_2012.02.20_toy.txt

inst/extdata/CCLE_copynumber_byGene_2012-09-29_toy.txt

inst/extdata/CCLE_hybrid_capture1650_hg19_NoCommonSNPs_NoNeutralVariants_CDS_2012.05.07_toy.maf

inst/extdata/CCLE_sample_info_file_2012-10-18_toy.txt

inst/extdata/CellLineIDNormalisationNov15.txt

inst/extdata/CellLineIDNormalisationNov15_toy.txt

inst/extdata/CosmicCLP_CompleteExport_v74_toy.tsv

inst/extdata/Dietlein2014_supp_table_1.txt

inst/extdata/scale_colours.txt

inst/extdata/toy.db

man/dietlein_data.Rd man/getAffyData.Rd man/getCopyNumberData.Rd man/getCosmicCLPData.Rd man/getDrugData_CCLE.Rd man/getDrugData_custom.Rd man/getHybcapData.Rd man/getResponseData.Rd man/getTissueCellLines.Rd man/getTissueInfo.Rd man/hello.Rd man/importCCLE_affy.Rd man/importCCLE_cn.Rd man/importCCLE_drugresponse.Rd man/importCCLE_hybcap.Rd man/importCCLE_info.Rd man/importCellLineIDs.Rd man/importCosmicCLP_exome.Rd man/makeGeneticVsGeneticDataFrame.Rd man/makeRespVsGeneticDataFrame.Rd man/makeRespVsRespDataFrame.Rd man/makeTallDataFrame.Rd man/makeToyDB.Rd man/makeWideDataFrame.Rd man/makeWideFromRespVsRespDataFrame.Rd man/makeWideFromTallDataFrame.Rd man/plotGeneticVsGeneticHist.Rd man/plotGeneticVsGeneticPoint.Rd man/plotHeatmap.Rd man/plotRespVsGeneticHist.Rd man/plotRespVsGeneticPoint.Rd man/plotRespVsRespDensity.Rd man/plotRespVsRespPairs.Rd man/plotRespVsRespWaterfall.Rd man/setupSQLite.Rd man/shinyGeneticVsGeneticApp.Rd man/shinyGeneticVsGeneticServer.Rd man/shinyRespVsGeneticApp.Rd man/shinyRespVsGeneticServer.Rd man/shinyRespVsRespApp.Rd man/shinyRespVsRespServer.Rd vignettes/overview.Rmd vignettes/visualisations.Rmd

chapmandu2/CancerCellLines documentation built on May 13, 2019, 3:27 p.m.