makeGeneticVsGeneticDataFrame: Get GeneticVsGenetic data

In chapmandu2/CancerCellLines: Analysis of cancer cell line data

Description

This function creates a data.frame suitable for the GeneticVsGenetic plots and shiny app

Usage

makeGeneticVsGeneticDataFrame(con, cell_lines, gene1, gene2, data_type1,
  data_type2)

Arguments

con	A SQLiteConnection object to the database
cell_lines	A vector of cell line identifiers
gene1	The gene symbol of the primary gene
gene2	The gene symbol of the secondary gene
data_type1	The data type required for gene1: should be one of 'affy', 'cn', 'hybcap', 'cosmicclp'
data_type2	The data type required for gene1: should be one of 'affy', 'cn', 'hybcap', 'cosmicclp'

Value

A data.frame containing the combined genetic data for the requested cell lines

chapmandu2/CancerCellLines documentation built on May 13, 2019, 3:27 p.m.