getCosmicCLPData: Extract Cosmic CLP Exome sequencing data
In chapmandu2/CancerCellLines: Analysis of cancer cell line data
Description
Usage
Arguments
Value
Description
This function creates a data.frame containing the Cosmic CLP exome sequencing datafrom the database for the requested cell lines and genes. Gene/sample pairs where there exists at least one missense, nonsense or framshift mutation are categorised as 1, those that don't are categorised as 0.
Usage
1
getCosmicCLPData(con, genes, cell_lines)
Arguments
con
A SQLiteConnection object to the database
genes
A vector of gene symbols
cell_lines
A vector of cell line identifiers
Value
A data.frame containing the hybrid capture sequencing data for the requested compounds and cell lines
chapmandu2/CancerCellLines documentation built on May 13, 2019, 3:27 p.m.
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Description Usage Arguments Value
Description
This function creates a data.frame containing the Cosmic CLP exome sequencing datafrom the database for the requested cell lines and genes. Gene/sample pairs where there exists at least one missense, nonsense or framshift mutation are categorised as 1, those that don't are categorised as 0.
Usage
1 | getCosmicCLPData(con, genes, cell_lines)
|
Arguments
con |
A |
genes |
A vector of gene symbols |
cell_lines |
A vector of cell line identifiers |
Value
A data.frame containing the hybrid capture sequencing data for the requested compounds and cell lines
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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