makeRespVsGeneticDataFrame: Get RespVsGenetic data

In chapmandu2/CancerCellLines: Analysis of cancer cell line data

Description

This function creates a data.frame suitable for the RespVsGenetic plots and shiny app

Usage

makeRespVsGeneticDataFrame(con, gene, cell_lines, drug, data_types = c("affy",
  "cn", "hybcap", "cosmicclp"), drug_df = NULL, tissue_info = "ccle")

Arguments

con	A SQLiteConnection object to the database
gene	The gene symbol for the gene of interest
cell_lines	A vector of cell line identifiers
drug	The drug of interest
data_types	A vector with default c('affy', 'cn', 'hybcap', 'resp', 'cosmicclp') to specify which data types should be returned.
drug_df	A data.frame containing input for the getDrugData_custom function
tissue_info	Source of tissue information - see ?getTissueInfo

Value

A data.frame containing the drug response and genetic data for the requested compounds and cell lines

chapmandu2/CancerCellLines documentation built on May 13, 2019, 3:27 p.m.