makeWideDataFrame: Merge different data types into a single wide data frame

In chapmandu2/CancerCellLines: Analysis of cancer cell line data

Description

This function creates a data.frame containing data for different data types in a form suitable for further statistical modelling in R.

Usage

makeWideDataFrame(con, genes, cell_lines, drugs, data_types = c("affy", "cn",
  "hybcap", "resp", "cosmicclp"), drug_df = NULL)

Arguments

con	A SQLiteConnection object to the database
genes	A vector of gene symbols
cell_lines	A vector of cell line identifiers
drugs	A vector of compound identifiers
data_types	A vector with default c('affy', 'cn', 'hybcap', 'resp', 'cosmicclp') to specify which data types should be returned.
drug_df	A data.frame containing input for the getDrugData_custom function

Value

A wide data.frame containing the requested data

chapmandu2/CancerCellLines documentation built on May 13, 2019, 3:27 p.m.