Man pages for chapmandu2/CancerCellLines
Analysis of cancer cell line data

dietlein_data	Response data from Dietlein et al
getAffyData	Extract affymetrix expression data
getCopyNumberData	Extract copy number data
getCosmicCLPData	Extract Cosmic CLP Exome sequencing data
getDrugData_CCLE	Extract CCLE drug response data
getDrugData_custom	Extract custom drug response data
getHybcapData	Extract hybrid capture sequencing data
getResponseData	Generic function to get response data from multiple sources
getTissueCellLines	Convert tissue to cell lines
getTissueInfo	Get tissue info for cell lines
hello	Hello, World!
importCCLE_affy	Import CCLE affy data
importCCLE_cn	Import CCLE copy number data
importCCLE_drugresponse	Import CCLE drug response data
importCCLE_hybcap	Import CCLE hybrid capture sequencing data
importCCLE_info	Import CCLE cell line information
importCellLineIDs	Import cell line interconversion data
importCosmicCLP_exome	Import Cosmic Cell Lines Project exome sequencing data
makeGeneticVsGeneticDataFrame	Get GeneticVsGenetic data
makeRespVsGeneticDataFrame	Get RespVsGenetic data
makeRespVsRespDataFrame	Make a RespVsResp data frame
makeTallDataFrame	Merge different data types into a single tall data frame
makeToyDB	Set up a toy database
makeWideDataFrame	Merge different data types into a single wide data frame
makeWideFromRespVsRespDataFrame	Make a RespVsResp wide data frame
makeWideFromTallDataFrame	Turn a tall data frame from makeTallDataFrame into a wide...
plotGeneticVsGeneticHist	Compare two genetic features (histogram)
plotGeneticVsGeneticPoint	Compare two genetic features (scatter/boxplot)
plotHeatmap	Make a heatmap from a tall data frame
plotRespVsGeneticHist	Compare response against a genetic feature (histogram)
plotRespVsGeneticPoint	Compare response against a genetic feature (scatter/boxplot)
plotRespVsRespDensity	Density plots for selected response variables
plotRespVsRespPairs	Correlation plots for selected response variables
plotRespVsRespWaterfall	Waterfall plot for selected response variables
setupSQLite	Connect to or create a RSQlite connection
shinyGeneticVsGeneticApp	Genetic vs Genetic Shiny visualisation
shinyGeneticVsGeneticServer	shinyGeneticVsGeneticServer
shinyRespVsGeneticApp	Runs the Shiny visualisation
shinyRespVsGeneticServer	shinyRespVsGeneticServer
shinyRespVsRespApp	Response vs Response Shiny visualisation
shinyRespVsRespServer	shinyRespVsRespServer