Files in chapmandu2/CollateralVulnerability2016
Collateral Vulnerability Pipeline
.Rbuildignore
.gitignore
CollateralVulnerability2016.Rproj
DESCRIPTION
NAMESPACE
R/BISEP_cv.R
R/combineResults.R
R/countHumanParalogs.R
R/doBISEPAnalysis.R
R/doFlyMineAnalysis.R
R/doMutationAnalysis.R
R/doRNAseqPlot.R
R/doWormMineAnalysis.R
R/getAllHumanGenes.R
R/getOrthologs.R
R/getTCGAMutationData.R
R/getTCGARNAseqData.R
R/plotBISEPOutput.R
R/plotCombinedResults.R
R/plotParalogRNAseq.R
R/setupSQLite.R
R/shinyVisApp.R
R/shinyVisServer.R
R/shinyVisUI.R
R/tableFlymineDetails.R
R/tableGenePairsDetails.R
R/tableMutationDetails.R
R/tableParalogDetails.R
R/tableWormMineDetails.R
README.Rmd
README.md
inst/doc/LungAdenoTCGA.R
inst/doc/LungAdenoTCGA.Rmd
inst/doc/LungAdenoTCGA.html
inst/doc/MelanomaTCGA.R
inst/doc/MelanomaTCGA.Rmd
inst/doc/MelanomaTCGA.html
inst/doc/Overview.R
inst/doc/Overview.Rmd
inst/doc/Overview.html
inst/doc/PancreaticTCGA.R
inst/doc/PancreaticTCGA.Rmd
inst/doc/PancreaticTCGA.html
inst/ruby/doFlyMineAnalysis.rb
inst/ruby/doWormMineAnalysis.rb
man/BISEP_cv.Rd
man/combineResults.Rd
man/countHumanParalogs.Rd
man/doBISEPAnalysis.Rd
man/doFlyMineAnalysis.Rd
man/doMutationAnalysis.Rd
man/doRNAseqPlot.Rd
man/doWormMineAnalysis.Rd
man/getAllHumanGenes.Rd
man/getOrthologs.Rd
man/getTCGAMutationData.Rd
man/getTCGARNAseqData.Rd
man/hello.Rd
man/plotBISEPOutput.Rd
man/plotCombinedResults.Rd
man/plotParalogRNAseq.Rd
man/setupSQLite.Rd
man/shinyVisApp.Rd
man/shinyVisServer.Rd
man/shinyVisUI.Rd
man/tableFlymineDetails.Rd
man/tableGenePairsDetails.Rd
man/tableMutationDetails.Rd
man/tableParalogDetails.Rd
man/tableWormMineDetails.Rd
vignettes/LungAdenoTCGA.Rmd
vignettes/MelanomaTCGA.Rmd
vignettes/Overview.Rmd
vignettes/PancreaticPACA-AU.Rmd
vignettes/PancreaticTCGA.Rmd
