doWormMineAnalysis: doWormMineAnalysis
In chapmandu2/CollateralVulnerability2016: Collateral Vulnerability Pipeline
Description
Usage
Arguments
Details
Value
Description
This function determines the lethality status in C elegans of a given human gene.
Usage
1
doWormMineAnalysis(con, genes, alt_mart = NULL)
Arguments
con
A SQLiteConnection object
genes
A vector of ENSEMBL gene ids
alt_mart
A Mart object created using biomaRt::useMart. This should specify hsapiens_gene_ensembl
as the dataset. See getOrthologs for more details.
Details
Note: queries the WormMine API using Ruby see http://im-dev.wormbase.org/tools/wormmine/api.do?subtab=ruby
Value
a data frame
chapmandu2/CollateralVulnerability2016 documentation built on May 13, 2019, 3:27 p.m.
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Description Usage Arguments Details Value
Description
This function determines the lethality status in C elegans of a given human gene.
Usage
1 | doWormMineAnalysis(con, genes, alt_mart = NULL)
|
Arguments
con |
A |
genes |
A vector of ENSEMBL gene ids |
alt_mart |
A Mart object created using biomaRt::useMart. This should specify |
Details
Note: queries the WormMine API using Ruby see http://im-dev.wormbase.org/tools/wormmine/api.do?subtab=ruby
Value
a data frame
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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