plotBISEPOutput: BISEP Plot

Description Usage Arguments Value

Description

Plot to visualise BISEP output

Usage

1
2
3
plotBISEPOutput(con, highlighted_gene = NULL, pi_value_th = 0.2,
  bisep_pval_th = 0.1, bi_value_th = 0, chromosome_sel = 0,
  xval = "pi_value", yval = "bisep_pval", colval = "selected")

Arguments

con

A SQLiteConnection object

highlighted_gene

Highlight the provided gene on the plot. Default NULL - ie don't highlight anything

pi_value_th

Set a PI value threshold. Default 0.2

bisep_pval_th

Set a BISEP p-value threshold. Default 0.1

bi_value_th

Set a Bimodal Index threshold. Default 0

chromosome_sel

A vector of chromosome id's. Default is 0 which means all chromosomes.

xval

The variable to plot on the x-axis.

yval

The variable to plot on the y-axis

Value

A ggplot2 object


chapmandu2/CollateralVulnerability2016 documentation built on May 13, 2019, 3:27 p.m.