Description Usage Arguments Value
Plot to visualise BISEP output
1 2 3 | plotBISEPOutput(con, highlighted_gene = NULL, pi_value_th = 0.2,
bisep_pval_th = 0.1, bi_value_th = 0, chromosome_sel = 0,
xval = "pi_value", yval = "bisep_pval", colval = "selected")
|
con |
A |
highlighted_gene |
Highlight the provided gene on the plot. Default NULL - ie don't highlight anything |
pi_value_th |
Set a PI value threshold. Default 0.2 |
bisep_pval_th |
Set a BISEP p-value threshold. Default 0.1 |
bi_value_th |
Set a Bimodal Index threshold. Default 0 |
chromosome_sel |
A vector of chromosome id's. Default is 0 which means all chromosomes. |
xval |
The variable to plot on the x-axis. |
yval |
The variable to plot on the y-axis |
A ggplot2 object
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