getTCGARNAseqData: Get TCGA RNAseq data

In chapmandu2/CollateralVulnerability2016: Collateral Vulnerability Pipeline

Description

Downloads, filters and populates the SQLite database with TCGA RNAseq data using functionality from the RTCGA package

Usage

getTCGARNAseqData(con, cancerTypes = "LUAD", releaseDate = "2015-11-01",
  sampletag = "01A", sampleids = NULL)

Arguments

con	A SQLiteConnection object
releaseDate	GDAC release date. See downloadTCGA documentation
sampletag	Refers to the sample part of the barcode. Default is 01A. See TCGA wiki
sampleids	A vector of sample ids to include. Default is NULL - ie no filtering. See TCGA wiki

Value

a data frame

chapmandu2/CollateralVulnerability2016 documentation built on May 13, 2019, 3:27 p.m.