Man pages for chapmandu2/CollateralVulnerability2016
Collateral Vulnerability Pipeline
| BISEP_cv | BISEP_cv |
| combineResults | combineResults |
| countHumanParalogs | countHumanParalogs |
| doBISEPAnalysis | BISEP Analysis |
| doFlyMineAnalysis | doFlyMineAnalysis |
| doMutationAnalysis | doMutationAnalysis |
| doRNAseqPlot | RNAseq plot |
| doWormMineAnalysis | doWormMineAnalysis |
| getAllHumanGenes | getAllHumanGenes |
| getOrthologs | getOrthologs |
| getTCGAMutationData | Get TCGA mutation data |
| getTCGARNAseqData | Get TCGA RNAseq data |
| hello | Hello, World! |
| plotBISEPOutput | BISEP Plot |
| plotCombinedResults | Plot of combined results |
| plotParalogRNAseq | Paralog expression |
| setupSQLite | Connect to or create a SQlite databas |
| shinyVisApp | Shiny Visualisation App |
| shinyVisServer | Shiny Visualisation Server |
| shinyVisUI | Shiny Visualisation UI |
| tableFlymineDetails | Flymine details table |
| tableGenePairsDetails | Gene Pairs table |
| tableMutationDetails | Mutation details table |
| tableParalogDetails | Paralog table |
| tableWormMineDetails | WormMine details table |
