Man pages for charles-plessy/smallCAGEqc
ad-hoc QC functions for shallow-sequenced test CAGE libraries
| bedFieldNames | bedFieldNames |
| chrFreqs | chrFreqs |
| countSymbols | countSymbols |
| erccSpikeConcentration | erccSpikeConcentration |
| exportInEnv | exportInEnv |
| fldgmArrayQC | fldgmArrayQC |
| fldgmChamberWell | fldgmChamberWell |
| fldgmConcentrationPlot | fldgmConcentrationPlot |
| fldgmPicoGreen | fldgmPicoGreen |
| fldgmPicoGreenStdCurve | fldgmPicoGreenStdCurve |
| hanabi | hanabi |
| hanabiPlot | hanabiPlot |
| hannot | hannot |
| hierarchAnnot | hierarchAnnot |
| is.singleton | is.singleton |
| listSymbols | listSymbols |
| llPostProcess | llPostProcess |
| loadBED12 | loadBED12 |
| loadLogs | loadLogs |
| loadMoiraiStats | loadMoiraiStats |
| mapStats | mapStats |
| nanoCAGE2017barcodes | 96 hexameric barcode sequences for sample indexing |
| plate96 | plate96 |
| plotAnnot | Plot annotation statistics |
| plot.hanabi | plot.hanabi |
| plotNameColor | plotNameColor |
| plotSlimSmear | plotSlimSmear |
| points.hanabi | points.hanabi |
| ranges2annot | ranges2annot |
| ranges2genes | ranges2genes |
| setBlock | setBlock |
| setupForMoirai | setupForMoirai |
| smallCAGEqc | smallCAGEqc |
| TPM | TPM |
| VennAB | VennAB |
