fldgmArrayQC: fldgmArrayQC
In charles-plessy/smallCAGEqc: ad-hoc QC functions for shallow-sequenced test CAGE libraries
Description
Usage
Arguments
Details
Examples
Description
Plots various quantities as heatmaps sorted by capture chamber.
Usage
1
fldgmArrayQC(LIBS, title = "")
Arguments
LIBS
A "libs" table, where rows are capture chambers and columns are various data.
title
The title displayed on the plot.
Details
The "libs" table must contain columns for 'Error', 'Concentration', 'total', 'extracted',
'spikes', 'rdna', 'properpairs', 'counts', 'mean_ch2', 'mean_ch3'. It must be sorted by
well of 96-well plate.
Each column containing numerical data is centered and reduce before plotting.
Examples
1
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5
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fldgmArrayQCplot <- function(RUN) fldgmArrayQC(libs[libs$Run==RUN,], RUN)
## Not run:
fldgmArrayQCplot(RunB)
## End(Not run)
export fldgmArrayQC
charles-plessy/smallCAGEqc documentation built on May 13, 2019, 3:31 p.m.
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Description Usage Arguments Details Examples
Description
Plots various quantities as heatmaps sorted by capture chamber.
Usage
1 | fldgmArrayQC(LIBS, title = "")
|
Arguments
LIBS |
A "libs" table, where rows are capture chambers and columns are various data. |
title |
The title displayed on the plot. |
Details
The "libs" table must contain columns for 'Error', 'Concentration', 'total', 'extracted', 'spikes', 'rdna', 'properpairs', 'counts', 'mean_ch2', 'mean_ch3'. It must be sorted by well of 96-well plate.
Each column containing numerical data is centered and reduce before plotting.
Examples
1 2 3 4 5 6 7 | fldgmArrayQCplot <- function(RUN) fldgmArrayQC(libs[libs$Run==RUN,], RUN)
## Not run:
fldgmArrayQCplot(RunB)
## End(Not run)
export fldgmArrayQC
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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