Files in charles-plessy/smallCAGEqc
ad-hoc QC functions for shallow-sequenced test CAGE libraries

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/CAGEscanMolecule.R R/TPM.R R/VennAB.R R/bedFieldNames.R R/chrFreqs.R R/countSymbols.R R/erccSpikeConcentration.R R/exportInEnv.R R/fldgmArrayQC.R R/fldgmChamberWell.R R/fldgmConcentrationPlot.R R/fldgmPicoGreen.R R/fldgmPicoGreenStdCurve.R R/hanabiPlot.R R/hannot.R R/hierarchAnnot.R R/is.singleton.R R/listSymbols.R R/llPostProcess.R R/loadBED12.R R/loadLogs.R R/loadMoiraiStats.R R/mapStats.R R/nanoCAGE2017barcodes.R R/plate96.R R/plotAnnot.R R/plotNameColor.R R/plotSlimSmear.R R/ranges2.R R/setBlock.R R/setupForMoirai.R R/smallCAGEqc.R README.md
TODO
data/nanoCAGE2017barcodes.R
inst/extdata/BED12_A.bed
inst/extdata/BED12_B.bed
inst/extdata/BED12_C.bed
inst/extdata/libs-with-all-metadata.tsv
inst/extdata/libs.csv
inst/extdata/samplename_to_sampleid.txt
inst/extdata/summary.txt
inst/rmarkdown/templates/cDNA_yields/skeleton/cDNA_yields.Rmd
inst/rmarkdown/templates/cDNA_yields/template.yaml
inst/rmarkdown/templates/nanoCAGE/skeleton/skeleton.Rmd
inst/rmarkdown/templates/nanoCAGE/template.yaml
man/TPM.Rd man/VennAB.Rd man/bedFieldNames.Rd man/chrFreqs.Rd man/countSymbols.Rd man/erccSpikeConcentration.Rd man/exportInEnv.Rd man/fldgmArrayQC.Rd man/fldgmChamberWell.Rd man/fldgmConcentrationPlot.Rd man/fldgmPicoGreen.Rd man/fldgmPicoGreenStdCurve.Rd man/hanabi.Rd man/hanabiPlot.Rd man/hannot.Rd man/hierarchAnnot.Rd man/is.singleton.Rd man/listSymbols.Rd man/llPostProcess.Rd man/loadBED12.Rd man/loadLogs.Rd man/loadMoiraiStats.Rd man/mapStats.Rd man/nanoCAGE2017barcodes.Rd man/plate96.Rd man/plot.hanabi.Rd man/plotAnnot.Rd man/plotNameColor.Rd man/plotSlimSmear.Rd man/points.hanabi.Rd man/ranges2annot.Rd man/ranges2genes.Rd man/setBlock.Rd man/setupForMoirai.Rd man/smallCAGEqc.Rd
smallCAGEqc.Rproj
vignettes/plotAnnot.R vignettes/plotAnnot.Rmd
vignettes/plotAnnot.html
vignettes/plotAnnot.md
vignettes/plotAnnot_files/figure-html/all-1.png
vignettes/plotAnnot_files/figure-html/annotation-1.png
vignettes/plotAnnot_files/figure-html/counts-1.png
vignettes/plotAnnot_files/figure-html/mapped-1.png
vignettes/plotAnnot_files/figure-html/qc-1.png
vignettes/plotAnnot_files/figure-html/steps-1.png
charles-plessy/smallCAGEqc documentation built on Jan. 28, 2018, 1:42 a.m.