Description Usage Arguments Value See Also Examples
hierarchical annotation of a Genomic Range as promoter, exon or intron.
ranges2annot(ranges, annot, showClasses = NULL)
The Genomics Ranges object, for example extracted from a
RangedSummarizedExperiment object with the
A Genomics Ranges object providing enough information for inferring promoters, exons and introns. Typically GENCODE.
A factor of same length as the GRanges object, indicating if the interval is promoter, exon, intron or unknown.
Other smallCAGEqc annotation functions:
1 2 3 4
## Not run: rowRanges(l1)$annotation <- ranges2annot(rowRanges(l1), gff) ## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.