nanoCAGE2017barcodes: 96 hexameric barcode sequences for sample indexing
In charles-plessy/smallCAGEqc: ad-hoc QC functions for shallow-sequenced test CAGE libraries
Description
Usage
Format
Author(s)
References
Description
Sequence of the 96 barcodes used in Poulain et al., 2017. NanoCAGE
libraries can index samples by inserting barcodes in the template-switching
oligonucleotide. A list of 96 barcodes, was published in Poulain et
al., 2017. The barcodes were selected to avoid palindromes, polynucleotide
tracts, and sequence similarity.
Usage
1
Format
A data frame with one column named barcodes.
Author(s)
Jean-Étienne Morlighem, Charles Plessy
References
Poulain S, Kato S, Arnaud O, Morlighem JÉ, Suzuki M, Plessy C,
Harbers M. NanoCAGE: A Method for the Analysis of Coding and Noncoding
5'-Capped Transcriptomes. Methods Mol Biol. 2017 1543:57-109
charles-plessy/smallCAGEqc documentation built on May 13, 2019, 3:31 p.m.
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Description Usage Format Author(s) References
Description
Sequence of the 96 barcodes used in Poulain et al., 2017. NanoCAGE libraries can index samples by inserting barcodes in the template-switching oligonucleotide. A list of 96 barcodes, was published in Poulain et al., 2017. The barcodes were selected to avoid palindromes, polynucleotide tracts, and sequence similarity.
Usage
1 |
Format
A data frame with one column named barcodes.
Author(s)
Jean-Étienne Morlighem, Charles Plessy
References
Poulain S, Kato S, Arnaud O, Morlighem JÉ, Suzuki M, Plessy C, Harbers M. NanoCAGE: A Method for the Analysis of Coding and Noncoding 5'-Capped Transcriptomes. Methods Mol Biol. 2017 1543:57-109
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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